species:   Rhsol
pid:       PID0477
parent:    Rhi-milR-120
paralog:   
locus:     KB317706.1:539986-540055
matures:   ['UCGAGUCGAGGAUUGUAGGGCC', 'AGUUGCAGACCAUCAUGAAGGGU']
srr:       SRR1994877
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram KB317706.1:539986-540055

0 out of bounds
2 alignments
2 proper strand
2 stranded perfect matches

     *************************          *************************     
CUCGAAUUGAUCGAGUCGAGGAUUGUAGGGCCUGUAAAGGAGUUGCAGACCAUCAUGAAGGGUAUUCGAA
.((((((...((..((.((((.((((((..(((....)))..)))))).)).))))...))..)))))).
----------UCGAGUCGAGGAUUGUAGGGCC-------------------------------------- l=22 a=0 c
----------------------------------------AGUUGCAGACCAUCAUGAAGGGU------- l=23 a=0 c*
-------UGAUCGAGUCGAGGAUUGUAGGG---------------------------------------- l=23 a=1 ma
------------------------------------------UUGCAGACCAUCAUGAAGGGUAU----- l=23 a=0 ma*

-------UGAUCGAGUCGAGGAUUGUAGGG---------------------------------------- l=23 a=1 (ma)
---------AUCGAGUCGAGGAUUGUAGGGCCU------------------------------------- l=24 a=1 

mb-01011
ax-1001011
ku-01
ss-110111101100
fn-011
